Role IT solutions, theoretical knowledge and
social infrastructure have in allowing for efficient gathering and
analysis of clinical data.
Monday, April 27
4:00 pm Event Chairperson’s Opening Remarks
Cindy Crowninshield, Conference Director, Cambridge
Healthtech Institute
Keynote Introduction: Microsoft
4:15 Plenary
Keynote
Research Computing and Infrastructure Technology
Chris Dagdigian, Founding Partner and Director of
Technology, BioTeam, Inc.
5:00 Welcome Reception in the Exhibit Hall
Drop off a business card at the CHI Sales Booth for a
chance to win 1 of 2 iPods ®!
7:00 Networking Event hosted by BiotechTuesday
Tuesday, April 28
7:30 am Registration and Morning Coffee
8:15 Event Chairperson’s Opening Remarks
Phillips Kuhl, Co-founder and President, Cambridge
Healthtech Institute
Keynote Introduction: Ken Buetow, Ph.D., Associate
Director, Bioinformatics and Information Technology, National Cancer Institute
8:20 Plenary
Keynote
Integrative Genomics
Eric E. Schadt, Ph.D., Executive Scientific Director, Genetics, Rosetta Inpharmatics/Merck Research Labs; Vice President and Chief Scientific Officer, Sage
9:00 Keynote Presentation & 2009 Benjamin
Franklin Award
9:30 Coffee
Break, Exhibit and Poster Viewing in the Exhibit Hall
10:50 Track Chairperson’s Remarks
Joan Chambers, Senior Director of Marketing &
Operations, Publications, Cambridge Healthtech Institute (CHI)
11:00 The Journey towards an Integrated Clinical
Data Management Platform: Challenges and Potential
Jennifer Teta, Director, Clinical Research Information Services, Merck & Co., Inc.
A patient data management platform was implemented with
100% of late stage trials using EDC and a Janus-based clinical data warehouse
based on external standards. Lessons learned from this work will be discussed
including the challenges and potential of a clinical data warehouse for
integrating data, thoughts on the advantages of implementing standards early in
the patient data flow process, and the implication of various architectures on
the ability to effectively partner with others.
11:30 How a New IT Specification Will Help Clinical
Investigators Reduce Their Paperwork and Get Back To Their Real Work
Rich Furr, Head, Global Regulatory Affairs and Chief
Compliance Officer, SAFE-BioPharma Association
Use of the IHE Retrieve Form for Data Capture allows
creation of electronic case report forms and individual case safety reports by
parsing electronic health records to identify and retrieve data directly to EDC
systems based on specified values. This presentation will report on the problem
faced by clinical investigators and the results of the joint initiative to
address it. Understand the technology, procedures and policies that support the
use of digital identities and digital signatures across the clinical trial
space.
12:00 eSubmissions: What AstraZeneca Learned
Richard Ware, Senior Principal Business Partner,
Regulatory Affairs, Global Drug Development Information Systems, AstraZeneca
Pharmaceuticals
On September 18, 2006, AstraZeneca (AZ) U.S. Regulatory Affairs submitted the first electronic original 356h form to the FDA. In the past, paper originals were the only way to comply with regulations. By using SAFE-BioPharma digital signatures and the FDA Electronic Submissions Gateway (ESG), AstraZeneca reached a milestone for the biopharmaceutical industry.
No paper original of the 356h exists. AstraZeneca received BIO-IT World magazine's 2008 Best Practices Grand Prize for its pioneering accomplishment. The proposed presentation will explain how AZ implements eSubmissions and the internal process that resulted in achieving this industry milestone.
12:30 Luncheon Presentation
Sponsored by 
Visual
Decision Support for Clinical Trial Management
Jason Neiss, Product Manager, Life Sciences, Viz | General Dynamics
Better tools are needed to help people interpret and act on integrated
clinical trials data. Data capture or workflow-centric tools are inadequate for
distributed managers, sponsors, and regulators who need both summary and
detailed information to support study and portfolio decisions. Visualization
tools should help reveal answers to known questions, but they should also allow
non-programmers to pose and collaboratively answer new questions they didn’t
know theycould ask. This session will feature a case study of how a major
biopharma uses collaborative visualization software to give managers and
analysts topsight to more easily analyze data, detect problems, and plan
solutions.
1:40 Chairperson’s Remarks
Joan Chambers, Senior Director of Marketing &
Operations, Publications, Cambridge Healthtech Institute (CHI)
1:45 Standards-Based Reference Architecture for Advanced Clinical Research Informatics and Patient Care
Jomol Mathew, Ph.D., Director, Clinical Research Information Technology, Dana-Farber Cancer Institute
Kevin Coonan, M.D., Clinical Research Information Technology, Dana-Farber Cancer Institute
We present a standards-based reference architecture for semantic interoperability between Clinical Information Systems (CIS)/Electronic Health Records (EHRs) and Clinical Trial Management Systems (CTMS). This is based upon the HL7 version 3.1 standards architecture using clinical terminologies designed as part of the Federal Health Architecture/Consolidated Health Informatics (FHA/CHI) to provide a ubiquitous and unambiguous framework. This reference architecture leverages existing terminologies (such as SNOMED-CT, NDFRT, LOINC, and RxNorm) used in health care delivery, clinical trials, structured product labeling (SPL), clinical decision support systems, HL7/ASTM Continuity of Care Document (CCD), and health care reimbursement claims attachments. We leverage a joint HL7/ISO 13606/OpenEHR effort at developing detailed Clinical Models which seeks to define the semantics of clinical findings (such as used in patient health histories, clinical notes, case report forms, diagnosis, or end points) which can be implemented using a range of additional transformations (including HL7 version 2.3+ messages, electronic data capture, or clinical documents) and platforms. This architecture is designed to support such diverse use cases as adverse event description and reporting, clinical decision support, translational research, personalized medicine and individual life-time health records. The architecture is also designed as interchangeable and configurable to serve as an underpinning for EHR/Electronic Data Capture system development. We discuss the design process and rationale, requirements for reference implementation, imperatives to HITSP and CCHIT, as well as required additional research and development.
Session Chair: Ken Buetow, Ph.D. Associate Director for Bioinformatics and Information Technology, National Cancer Institute
Featured by

2:15 The Cancer Biomedical Informatics Grid
(caBIG®)
Clinical Trials Suite: A Standardized, Integrated Approach to Clinical Trials
Management and Linking Research to Care
John Speakman,
Associate Director, Clinical Products and Programs, Center for Bioinformatics
and Information Technology, National Cancer Institute (NCI)
William Dyer, CRI,
Principal Consultant, Bioinformatics, National Cancer Institute
The caBIG® vision is a virtual network of interconnected
data, individuals, and organizations whose goal is to redefine how research is
conducted, care is provided, and patients/participants interact with the
biomedical research enterprise. The caBIG® Clinical Trials Suite is a
comprehensive set of modular, interoperable and standards-based tools designed
to meet the diverse clinical trials management needs across the clinical
research community. Learn how caBIG® Clinical Trials Workspace and suite of
applications achieves interoperability and data sharing across clinical
research and translational medicine.
2:45 Knowledege Based Approach to Design and Visualization
of Clinical Trial Operations
Dave Parrish, M.S., Director Informatics, Immune
Tolerance Network
This presentation will
demonstrate a visualization framework based on the Co-Motion visualization
environment integrated with the ontology based trial design application
(Trial-Designer). We will demonstrate how the integration of these two
applications will allow an end user to define and interact with information
generated in diverse trials from a single user interface and drive a common
ontology based framework.
Sponsored by

3:15 Extending
Clinical IT to Support Adaptive Clinical Trials
Tom Parke, BSc, Head of Clinical Trial Solutions, Tessella Inc
Adaptive Clinical trials are a key part of the solution to the problems of drug development in pharmaceutical companies. Particularly when considered at the program level and not simply the trial level, adaptive designs offer a number of ways to significantly improve the science and efficiency of drug development. At the same time, however, they set a number of challenges to the conventional clinical trial operation. This talk will discuss how can clinical IT can help meet these challenges.
3:30 Refreshment Break, Exhibits and Poster
Viewing in the Exhibit Hall
Session Chair: Ken Buetow, Ph.D. Associate Director for Bioinformatics and Information Technology, National Cancer Institute
Featured by

3:45 caBIG®: An Interoperable IT
Framework for Personalized
Medicine
(Joint w/eHealth Solutions Track)
Ken Buetow, Ph.D. Associate Director for Bioinformatics
and Information Technology, National Cancer Institute
Personalized approaches to drug discovery, drug development and clinical care promise a new generation of preventive and preemptive health care. But countless data “disconnects” continue to afflict these biomedical “pillars”, resulting in delays, dysfunction, and poor clinical outcomes. The prerequisite to overcome these hurdles is broad IT interoperability within and across institutions. Many of the challenges of linking research with clinical care to achieve “smart” and personalized medicine are already addressed by caBIG® (cancer Biomedical Informatics Grid® ), developed by the National Cancer Institute and now being deployed within and beyond the cancer community. caBIG® — through its interoperable software tools, standards, databases, and grid-enabled computing infrastructure — is accelerating the shift to the personalized medicine paradigm. This session, presented by leaders from across the country, will showcase actual case studies of improved processes in discovery research, biobanking, imaging, and clinical research; new models of connectivity to enhance and accelerate research collaborations; and a new ecosystem to drive continuous learning from bench to bedside and back .
4:45 Do Healthcare IT Standards Hamper the
Advance of Science? (Joint with eHealth
Solutions Track)
Werner Ceusters, M.D., Director, Ontology Research
Group, NYS Center of Excellence in Bioinformatics & Life
Sciences
Standards are an absolute requirement to make semantic
interoperability in healthcare informatics a reality. To achieve the goals of
translational medicine, a variety of heterogeneous systems containing data at
various levels of granularity need to be made interoperable. This talk will
present an analysis of a number of adopted standards and highlight a number of
problematic issues and propose directions for solutions.
5:15 2009 Best of Show Awards in Exhibit Hall
6:15 Exhibit Hall Closes
6:30 2009 Bio-IT World’s
Best Practices Awards/Dinner
Wednesday, April 29
7:30 am Registration and Morning Coffee
8:00 Event Chairperson’s Opening Remarks
Kevin Davies, Ph.D., Editor-in-Chief, Bio-IT World
8:05 Plenary
Keynote
Personalized Genomics – The Impact of Large-Scale Human
Sequencing Projects
Clifford Reid,
Ph.D., Chief Executive Officer, Complete Genomics, Inc.
8:45 Keynote Panel
The Future of Personal Genomics
A special plenary panel discussion featuring:
-
Jorge Conde, Co-Founder & CEO, Knome, Inc.
-
Robert C.
Green, M.D., M.P.H. Professor of Neurology, Genetics and Epidemiology, Boston University
School of Medicine and Public Health
-
John
Halamka, M.D., M.S., CIO, Harvard Medical School
-
Clifford
Reid, Ph.D., Chief Executive Officer, Complete Genomics, Inc.
-
Philip Reilly, Third Rock Ventures
-
Dietrich
Stephan, Ph.D., Co-founder and Chief Science Officer, Navigenics, Inc.
9:45 Coffee
Break, Exhibit Viewing, Vendor Theater Presentations, and Poster Competition in
the Exhibit Hall
10:45 Track Chairperson’s Remarks
Joan Chambers, Senior Director of Marketing &
Operations, Publications, Cambridge Healthtech Institute (CHI)
11:00 Enabling a Collaborative, Informative, and Compliant Biobanking Environment
Kevin L. Swank, Lead Analyst/Programmer – RLIMS, Mayo Clinic
Organizations in today’s economy are facing unprecedented pressures to ensure research success, while at the same time, maximizing operational efficiency and achieving the best return on investment (ROI). In addition, the complexity of managing the dramatically increased number of specimens throughout the organization compels them to replace their existing processes and ad-hoc systems with enterprise solutions. This talk will examine the critical biorepository management requirements for biospecimen accessioning laboratories at Mayo and share experiences in deploying a multi-phase, enterprise biorepository management solution that include ad hoc point system vs. enterprise solution, configurability to fulfill local and enterprise requirements, and truly compliant and secured operational environment.
11:30 Operationalizing Research in Clinical
Application of Personalized Medicine
Moderator: Ronald Waife, MPH, President, Waife &
Associates, Inc. and
Ben Zeskind, Ph.D., M.B.A., Founder and Chief Executive Officer, Immuneering Corporation
This session will feature industry observers’ current
predictions on issues and solutions for how to design and conduct the first
trials with personalized medicines and how to set up in advance an environment
for rapid sharing of lessons learned for industry and regulatory authorities.
12:30 Luncheon in the Exhibit Hall
2:00 Exhibit Hall Closes
1:55 Chairperson’s Remarks
Joan Chambers, Senior Director of Marketing &
Operations, Publications, Cambridge Healthtech Institute (CHI)
2:00 Collaborative Translational Research in the Public Sector
Kyle Brown, President, Innolyst
The public sector funds as much research as all pharmaceutical companies combined - with no common infrastructure. Learn how foundations and academia use technology to implement translational research programs. Shared target validation, screening, project management, and patient registries enable public organizations to manage research programs across an array of geographically dispersed vendors and researchers.
2:30 Molecular Considerations in Clinical Decisions: Aromatase Inhibitors in Breast Cancer
Michael N. Liebman, Ph.D., Managing Director, Strategic Medicine, Inc.
Aromatase inhibitors have become a significant treatment option for post-menopausal breast cancer patients because of their efficacy and limited profile of side-effects. Conventional drug development has focused on characterization of the drug, itself. Our analysis has shown that the clinical decision to treat with these drugs significantly benefits from understanding the biological complexity of the drug target, aromatase. This analysis incorporates structure-function analysis at both the gene and protein levels, evaluates the impact of SNP’s on the target and probes the specific molecular characteristics of the enzyme structure-function response as expressed in extended biological pathways and networks. The ultimate goal is better stratification of the patient and of the disease to provide optimal decision support through molecular diagnostics and analysis.
3:00 Scientific Intelligence in R&D -
Knowledge Integration across Discovery, Pre-clinical, and Clinical Development
(Joint with IT Infrastructure and Operations &
Informatics for Genomic Medicine Tracks)
John Apathy, Assistant Vice President, Business Systems
and Processes - Discovery, PreClinical, and Vaccines, Wyeth
Investments in information systems within Pharmaceutical
R&D organizations tend to be made by individual departments or functional
units and serve the local purpose of those units. Over time these silo-based
approaches lead to challenges in enabling the exchange of data, information,
and knowledge across the various Discovery, Pre-clinical, and Clinical
Development domains. At Wyeth, we are developing solutions that cut across organizational
boundaries and have developed a set of Knowledge Integration solutions allowing
senior scientists, study directors, and functional management to find, access,
and manage disparate R&D data, information, and knowledge assets. This
presentation provides an overview of the journey undertaken to ensure the
right information is available to researchers and management within Wyeth
Preclinical R&D organization at the right time to enable faster
decision-making.
3:30 Service Oriented Architecture – A New Data
Sharing Architecture for the Feinstein Institute for Medical Research
(Joint with IT Infrastructure & Operations and
Informatics for Genomic Medicine Tracks)
Robert Lundsten,
Director of Biorepository, Feinstein Institute for Medical Research
The ability to
integrate data from multiple independent data repositories across the North
Shore Long Island Jewish Health System’s (NSLIJHS) 15 hospitals and many
outpatient care centers into a specialized data warehouse environment for
analysis and data mining is a daunting process for many reasons. Creating the
scaffolding to facilitate data transfers requires many components including a
mediating registry and meta data repository, a data warehouse, a federated
identity manager, a standards based methods(s), a web-based portal or user
interface, and the services management layer. This talk will describe how the
North Shore Informatics Group (NSIG) created a pilot framework of a Service
Oriented Architecture that integrated and shared data between different data
management groups.
4:00 Conference Adjourns